Working Days
May 16th – 18th 9:30-18:00 – Institute of Complex Systems of Valparaíso
The focus will be to “work-discuss” in different packages of expeditions CEODOS and Atlant Eco relevant from the bioinformatics, data analysis and modeling direction in restricted groups. Ideas of topics are: 1) Sequencing and assembly protocols and final product standards; 2) Biological networks: metabolic, regulatory, diversity, etc.; 3) Biologically defined geographies; 4) Modeling: Lagrangian approaches; macroecology approaches; 5) Data Analysis techniques applied to the ocean.
Day 1 – Tuesday 16: “Genomics day: from sequences to biological information” (led by Olivier Jaillon – CEA)
10:00-10:30 Olivier Jaillon – Genoscope: As genomics sciences meet data sciences and modeling (slides)
10:30-11:00 Matt Sullivan – Ohio State U.: Virus eco-genomics (slides)
11:00-11:30 Eric Pelletier – Genoscope: Climbing the omics complexity ladder (slides)
12:00-11:30 Coffee Break
12:00-12:30 Hugo Sarmento and Paula Huber – U. San Carlos: Navigating the challenges and opportunities of genomic science in ocean research in southern countries (slides)
12:30-13:00 Federico Ibarbalz – U. Buenos Aires: Chasing “coccolithophores” – a tale of two vessels, 6 drifters and satellites (slides)
13:00-14:30 Lunch Break
14:30-15:00 Alejandro Maass – U. Chile: Gene regulatory elements a resource to classify ocean microbiome functioning (slides)
15:00-15:30 Alex di Genova – U. O’Higgins: Toward improved MAGs characterization (slides)
15:30-16:00 Nayat Sánchez and Luis Martí – Inria Chile: Applying AI to understand the Ocean and climate change
16:00-18:30 Free discussion I (Coffee provided in parallel)
Day 2 – Wednesday 17: “The metabolic ocean world” (coordinated by: Damien Eveillard)
9:30-10:00 Damien Eveillard – U. Nantes: Impacts of the metabolism in the ocean
10:00-10:30 Sacha Bourgeois-Gironde (on-line) – École Normale Sup. Paris: Designing intellectual rights for marine ecosystems (slides)
10:30-11:00 Constanza Andreani – U. Chile: Functional characterization of biosynthetic classes (slides)
11:00-11:30 Coffee Break
11:30-12:00 Andre Abreu – Tara Océan: Discussion about Plank’Eco project and its KOPAs proposal (slides)
12:00-12:30 Lars Stemmann: On physical modeling of the Mauritania-Senegal upwelling for Plank’Eco project
12:30-13:00 Geraldine Jean – U. Nantes: Models and algorithms for genome comparison and sequence alignment (slides)
13:00-14:30 Lunch Break
14:30-15:00 Laura Jiménez – U. Chile/PUC: The ecological niche and applications (slides)
15:00-15:30 Antoine Regimbeau – U. Nantes: The metabolic niche and applications (slides)
15:30-16:00 Benoit de Delahaye: – U. Nantes An automated technique for model parameterization using data (slides)
16:00-18:00 Free discussion II (Coffee provided in parallel)
19:30-22:30 Workshop Diner: “Traditional Restaurant of Valparaíso: El Bote Salvavidas” (Muelle Prat)
Day 3 – Thursday 18: “Ecology meets mathematical modeling & data science: the seascape” (coordinated by: Daniele Iudicone)
9:30-10:00 Daniele Iudicone – U. Naples: Towards a definition of seascape
10:00-10:30 Emanuele Pigani – U. Padua: Modeling bio-geographies – a conceptual approach (slides)
10:30-11:00 Paul Fremont – Giorgia Tech.: Using machine learning to infer plankton biogeography and its response to climate change (slides)
11:00-11:30 Coffee Break
11:30-12:00 Matt Sullivan – Ohio State U.: Math challenges in ocean viromics
12:00-12:30 Luis Valenzuela – Inria Chile: Enhancing Interpretability of Global Plankton Communities Modeling through Multi-Omics and AI Techniques (slides)
12:30-13:00 Hugo Carrillo – Inria Chile: Modeling and Simulation of Ocean Phenomena Using Physics-Based Machine Learning (slide)
13:00-14:30 Lunch Break
14:30-15:00 Nicolás Toro – U. Chile: Some applications of causality methods to omics data
15:00-15:30 Pablo Marquet – PUC: Ecological ideas for ocean data (slides)
15:30-18:30 Free discussion III (Coffee provided in parallel)